Dalam melaksanakan Tri Dharma Perguruan Tinggi, Jurusan Kedokteran Gigi Unsoed juga melakukan kerjasama dengan beberapa instansi atau perusahaan untuk mendukung terlaksananya pendidikan yang komprehensif dan pengabdian kepada masyarakat yang maksimal. Dibawah ini adalah beberapa instansi yang telah bekerjasama dengan Jurusan kedokteran Gigi Unsoed:
- STIKES Al-Irsyad Al-Islamiyah Cilacap
- Pemerintah Kabupaten Banyumas
- Dinas Kesehatan Kabupaten Banyumas
- PT. Prodia Widyahusada
- Toko Buku Sagung Seto Jakarta
- RSUD Tugurejo Prov. Jateng
- LEMBAGA PENELITIAN & PENGEMBANGAN SUMBER DAYA & LINGKUNGAN HIDUP (LPPSLH) PURWOKERTO
- FKG UNIVERSITAS HANG TUAH SURABAYA
- RSUD PROF. Dr. MARGONO SOEKARJO PURWOKERTO
- RSUD AJIBARANG
- RSUD BANYUMAS
- KLINIK PRATAMA TANJUNG PURWOKERTO
- KLINIK SIDABOA, PATIKRAJA, BANYUMAS
- KLINIK AS-SYIFA KARANG LEWAS
- PPK-1 AS-SYIFA KARANG LEWAS
- GUBERNUR JAWA TENGAH
- PT. Unilever, Tbk
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